bioperl 1.6.1 のテストを動かしてみた

bioperl

実効結果

Result: FAIL
Failed 3/331 test programs. 2/20974 subtests failed.

tar jvfz BioPerl-1.6.1.tar.bz2
cd BioPerl-1.6.1
perl Build.PL
./Build test

blib/script/bp_sreformat.PLS -> blib/script/bp_sreformat.pl
blib/script/seqconvert.PLS -> blib/script/bp_seqconvert.pl
blib/script/parse_hmmsearch.PLS -> blib/script/bp_parse_hmmsearch.pl
blib/script/hivq.PLS -> blib/script/bp_hivq.pl
blib/script/bp_seqret.PLS -> blib/script/bp_seqret.pl
blib/script/tree2pag.PLS -> blib/script/bp_tree2pag.pl
blib/script/meta_gff.PLS -> blib/script/bp_meta_gff.pl
blib/script/nexus2nh.PLS -> blib/script/bp_nexus2nh.pl
blib/script/filter_search.PLS -> blib/script/bp_filter_search.pl
blib/script/bp_seqfeature_gff3.PLS -> blib/script/bp_seqfeature_gff3.pl
blib/script/generate_histogram.PLS -> blib/script/bp_generate_histogram.pl
blib/script/heterogeneity_test.PLS -> blib/script/bp_heterogeneity_test.pl
blib/script/flanks.PLS -> blib/script/bp_flanks.pl
blib/script/split_seq.PLS -> blib/script/bp_split_seq.pl
blib/script/load_gff.PLS -> blib/script/bp_load_gff.pl
blib/script/biogetseq.PLS -> blib/script/bp_biogetseq.pl
blib/script/bp_fetch.PLS -> blib/script/bp_fetch.pl
blib/script/mutate.PLS -> blib/script/bp_mutate.pl
blib/script/process_sgd.PLS -> blib/script/bp_process_sgd.pl
blib/script/bp_index.PLS -> blib/script/bp_index.pl
blib/script/dbsplit.PLS -> blib/script/bp_dbsplit.pl
blib/script/oligo_count.PLS -> blib/script/bp_oligo_count.pl
blib/script/hmmer_to_table.PLS -> blib/script/bp_hmmer_to_table.pl
blib/script/process_gadfly.PLS -> blib/script/bp_process_gadfly.pl
blib/script/bp_seqfeature_load.PLS -> blib/script/bp_seqfeature_load.pl
blib/script/fastam9_to_table.PLS -> blib/script/bp_fastam9_to_table.pl
blib/script/biofetch_genbank_proxy.PLS -> blib/script/bp_biofetch_genbank_proxy.pl
blib/script/seq_length.PLS -> blib/script/bp_seq_length.pl
blib/script/extract_feature_seq.PLS -> blib/script/bp_extract_feature_seq.pl
blib/script/genbank2gff.PLS -> blib/script/bp_genbank2gff.pl
blib/script/bulk_load_gff.PLS -> blib/script/bp_bulk_load_gff.pl
blib/script/taxid4species.PLS -> blib/script/bp_taxid4species.pl
blib/script/search2gff.PLS -> blib/script/bp_search2gff.pl
blib/script/blast2tree.PLS -> blib/script/bp_blast2tree.pl
blib/script/unflatten_seq.PLS -> blib/script/bp_unflatten_seq.pl
blib/script/make_mrna_protein.PLS -> blib/script/bp_make_mrna_protein.pl
blib/script/search2tribe.PLS -> blib/script/bp_search2tribe.pl
blib/script/bioflat_index.PLS -> blib/script/bp_bioflat_index.pl
blib/script/pairwise_kaks.PLS -> blib/script/bp_pairwise_kaks.pl
blib/script/query_entrez_taxa.PLS -> blib/script/bp_query_entrez_taxa.pl
blib/script/bp_seqfeature_delete.PLS -> blib/script/bp_seqfeature_delete.pl
blib/script/fast_load_gff.PLS -> blib/script/bp_fast_load_gff.pl
blib/script/chaos_plot.PLS -> blib/script/bp_chaos_plot.pl
blib/script/bp_mrtrans.PLS -> blib/script/bp_mrtrans.pl
blib/script/search2alnblocks.PLS -> blib/script/bp_search2alnblocks.pl
blib/script/taxonomy2tree.PLS -> blib/script/bp_taxonomy2tree.pl
blib/script/einfo.PLS -> blib/script/bp_einfo.pl
blib/script/download_query_genbank.PLS -> blib/script/bp_download_query_genbank.pl
blib/script/bp_nrdb.PLS -> blib/script/bp_nrdb.pl
blib/script/mask_by_search.PLS -> blib/script/bp_mask_by_search.pl
blib/script/gccalc.PLS -> blib/script/bp_gccalc.pl
blib/script/classify_hits_kingdom.PLS -> blib/script/bp_classify_hits_kingdom.pl
blib/script/composite_LD.PLS -> blib/script/bp_composite_LD.pl
blib/script/aacomp.PLS -> blib/script/bp_aacomp.pl
blib/script/revtrans-motif.PLS -> blib/script/bp_revtrans-motif.pl
blib/script/process_wormbase.PLS -> blib/script/bp_process_wormbase.pl
blib/script/local_taxonomydb_query.PLS -> blib/script/bp_local_taxonomydb_query.pl
blib/script/biblio.PLS -> blib/script/bp_biblio.pl
blib/script/remote_blast.PLS -> blib/script/bp_remote_blast.pl
blib/script/seqretsplit.PLS -> blib/script/bp_seqretsplit.pl
blib/script/genbank2gff3.PLS -> blib/script/bp_genbank2gff3.pl
blib/script/search2table.PLS -> blib/script/bp_search2table.pl
blib/script/search2BSML.PLS -> blib/script/bp_search2BSML.pl
blib/script/translate_seq.PLS -> blib/script/bp_translate_seq.pl
t/Align/AlignStats.t ......................... ok
t/Align/AlignUtil.t .......................... ok
t/Align/SimpleAlign.t ........................ ok
t/Align/TreeBuild.t .......................... ok
t/Align/Utilities.t .......................... ok
t/AlignIO/AlignIO.t .......................... ok
t/AlignIO/arp.t .............................. ok
t/AlignIO/bl2seq.t ........................... ok
t/AlignIO/clustalw.t ......................... ok
t/AlignIO/emboss.t ........................... ok
t/AlignIO/fasta.t ............................ ok
t/AlignIO/largemultifasta.t .................. ok
t/AlignIO/maf.t .............................. ok
t/AlignIO/mase.t ............................. ok
t/AlignIO/mega.t ............................. ok
t/AlignIO/meme.t ............................. ok
t/AlignIO/metafasta.t ........................ ok
t/AlignIO/msf.t .............................. ok
t/AlignIO/nexus.t ............................ ok
t/AlignIO/pfam.t ............................. ok
t/AlignIO/phylip.t ........................... ok
t/AlignIO/po.t ............................... ok
t/AlignIO/prodom.t ........................... ok
t/AlignIO/psi.t .............................. ok
t/AlignIO/selex.t ............................ ok
t/AlignIO/stockholm.t ........................ ok
t/AlignIO/xmfa.t ............................. ok
t/Alphabet.t ................................. ok
t/Annotation/Annotation.t .................... ok
t/Annotation/AnnotationAdaptor.t ............. ok
t/Assembly/Assembly.t ........................ ok
t/Assembly/ContigSpectrum.t .................. ok
t/Biblio/Biblio.t ............................ ok
t/Biblio/References.t ........................ ok
t/Biblio/biofetch.t .......................... ok
t/Biblio/eutils.t ............................ ok
t/ClusterIO/ClusterIO.t ...................... ok
t/ClusterIO/SequenceFamily.t ................. ok
t/ClusterIO/unigene.t ........................ ok
t/Coordinate/CoordinateGraph.t ............... ok
t/Coordinate/CoordinateMapper.t .............. ok
t/Coordinate/GeneCoordinateMapper.t .......... ok
t/LiveSeq/Chain.t ............................ ok
t/LiveSeq/LiveSeq.t .......................... ok
t/LiveSeq/Mutation.t ......................... ok
t/LiveSeq/Mutator.t .......................... ok
t/LocalDB/BioDBGFF.t ......................... ok
t/LocalDB/BlastIndex.t ....................... ok
t/LocalDB/DBFasta.t .......................... ok
t/LocalDB/DBQual.t ........................... ok
t/LocalDB/Flat.t ............................. ok
t/LocalDB/Index.t ............................ ok
t/LocalDB/Registry.t ......................... ok
t/LocalDB/SeqFeature.t ....................... ok
t/LocalDB/SeqFeature_BDB.t ................... ok
t/LocalDB/SeqFeature_SQLite.t ................ ok
t/LocalDB/transfac_pro.t ..................... ok
t/Map/Cyto.t ................................. ok
t/Map/Linkage.t .............................. ok
t/Map/Map.t .................................. ok
t/Map/MapIO.t ................................ ok
t/Map/MicrosatelliteMarker.t ................. ok
t/Map/Physical.t ............................. ok
t/Matrix/IO/masta.t .......................... ok
t/Matrix/IO/psm.t ............................ ok
t/Matrix/InstanceSite.t ...................... ok
t/Matrix/Matrix.t ............................ ok
t/Matrix/ProtMatrix.t ........................ ok
t/Matrix/ProtPsm.t ........................... ok
t/Matrix/SiteMatrix.t ........................ ok
t/Ontology/GOterm.t .......................... ok
t/Ontology/GraphAdaptor.t .................... ok
t/Ontology/IO/go.t ........................... ok
t/Ontology/IO/interpro.t ..................... ok
t/Ontology/IO/obo.t .......................... ok
t/Ontology/Ontology.t ........................ ok
t/Ontology/OntologyEngine.t .................. ok
t/Ontology/OntologyStore.t ................... ok
t/Ontology/Relationship.t .................... ok
t/Ontology/RelationshipType.t ................ ok
t/Ontology/Term.t ............................ ok
t/Perl.t ..................................... ok
t/Phenotype/Correlate.t ...................... ok
t/Phenotype/MeSH.t ........................... ok
t/Phenotype/Measure.t ........................ ok
t/Phenotype/MiniMIMentry.t ................... ok
t/Phenotype/OMIMentry.t ...................... ok
t/Phenotype/OMIMentryAllelicVariant.t ........ ok
t/Phenotype/OMIMparser.t ..................... ok
t/Phenotype/Phenotype.t ...................... ok
t/PodSyntax.t ................................ ok
t/PopGen/Coalescent.t ........................ ok
t/PopGen/HtSNP.t ............................. ok
t/PopGen/MK.t ................................ ok
t/PopGen/PopGen.t ............................ ok
t/PopGen/PopGenSims.t ........................ ok
t/PopGen/TagHaplotype.t ...................... ok
t/RemoteDB/BioFetch.t ........................ ok
t/RemoteDB/CUTG.t ............................ ok
t/RemoteDB/EMBL.t ............................ ok
t/RemoteDB/EUtilities.t ...................... ok
t/RemoteDB/EntrezGene.t ...................... ok
t/RemoteDB/GenBank.t ......................... ok
t/RemoteDB/GenPept.t ......................... ok
t/RemoteDB/HIV/HIV.t ......................... ok
t/RemoteDB/HIV/HIVAnnotProcessor.t ........... ok
Use of uninitialized value $rest[0] in join or string at (eval 68) line 15.
t/RemoteDB/HIV/HIVQuery.t .................... ok
t/RemoteDB/HIV/HIVQueryHelper.t .............. ok
t/RemoteDB/MeSH.t ............................ ok

# Failed test at t/RemoteDB/Query/GenBank.t line 53.
# got: '1'
# expected: '4'
# Looks like you planned 21 tests but ran 18.
# Looks like you failed 1 test of 18 run.
t/RemoteDB/Query/GenBank.t ...................
Dubious, test returned 1 (wstat 256, 0x100)
Failed 4/21 subtests
t/RemoteDB/RefSeq.t .......................... ok
t/RemoteDB/SeqHound.t ........................ ok
t/RemoteDB/SeqRead_fail.t .................... ok
t/RemoteDB/SeqVersion.t ...................... ok
t/RemoteDB/SwissProt.t ....................... ok

# Failed test at t/RemoteDB/Taxonomy.t line 53.
# got: '3'
# expected: '2'
# Looks like you failed 1 test of 103.
t/RemoteDB/Taxonomy.t ........................
Dubious, test returned 1 (wstat 256, 0x100)
Failed 1/103 subtests
t/Restriction/Analysis-refac.t ............... ok
t/Restriction/Analysis.t ..................... ok
t/Restriction/Gel.t .......................... ok
t/Restriction/IO.t ........................... ok
t/Root/Exception.t ........................... ok
t/Root/RootI.t ............................... ok

                          • EXCEPTION: Bio::Root::Exception -------------

MSG: request failed: HTTP/1.0 400 Bad Request
STACK: Error::throw
STACK: Bio::Root::Root::throw Bio/Root/Root.pm:368
STACK: Bio::Root::HTTPget::getFH Bio/Root/HTTPget.pm:239
STACK: Bio::Root::IO::_initialize_io Bio/Root/IO.pm:310
STACK: Bio::Root::IO::new Bio/Root/IO.pm:240
STACK: t/Root/RootIO.t:107

                                                                                                                    • -

# Looks like you planned 31 tests but ran 30.
# Looks like your test exited with 9 just after 30.
t/Root/RootIO.t ..............................
Dubious, test returned 9 (wstat 2304, 0x900)
Failed 1/31 subtests
t/Root/Storable.t ............................ ok
t/Root/Tempfile.t ............................ ok
t/Root/Utilities.t ........................... ok
t/SearchDist.t ............................... skipped: The optional module Bio::Ext::Align (or dependencies thereof) was not installed
t/SearchIO/CigarString.t ..................... ok
t/SearchIO/SearchIO.t ........................ ok
t/SearchIO/SimilarityPair.t .................. ok
t/SearchIO/Tiling.t .......................... ok
t/SearchIO/Writer/GbrowseGFF.t ............... ok
t/SearchIO/Writer/HSPTableWriter.t ........... ok
t/SearchIO/Writer/HTMLWriter.t ............... ok
t/SearchIO/Writer/HitTableWriter.t ........... ok
t/SearchIO/blast.t ........................... ok
t/SearchIO/blast_pull.t ...................... ok
t/SearchIO/blasttable.t ...................... ok
t/SearchIO/blastxml.t ........................ ok
t/SearchIO/cross_match.t ..................... ok
t/SearchIO/erpin.t ........................... ok
t/SearchIO/exonerate.t ....................... ok
t/SearchIO/fasta.t ........................... ok
t/SearchIO/gmap_f9.t ......................... ok
t/SearchIO/hmmer.t ........................... ok
t/SearchIO/hmmer_pull.t ...................... ok
t/SearchIO/infernal.t ........................ ok
t/SearchIO/megablast.t ....................... ok
t/SearchIO/psl.t ............................. ok
t/SearchIO/rnamotif.t ........................ ok
t/SearchIO/sim4.t ............................ ok
t/SearchIO/waba.t ............................ ok
t/SearchIO/wise.t ............................ ok
t/Seq/DBLink.t ............................... ok
t/Seq/EncodedSeq.t ........................... ok
t/Seq/LargeLocatableSeq.t .................... ok
t/Seq/LargePSeq.t ............................ ok
t/Seq/LocatableSeq.t ......................... ok
t/Seq/MetaSeq.t .............................. ok
t/Seq/PrimaryQual.t .......................... ok
t/Seq/PrimarySeq.t ........................... ok
t/Seq/PrimedSeq.t ............................ ok
t/Seq/Quality.t .............................. ok
t/Seq/Seq.t .................................. ok
t/Seq/WithQuality.t .......................... ok
t/SeqEvolution.t ............................. ok
t/SeqFeature/FeatureIO.t ..................... ok
t/SeqFeature/Location.t ...................... ok
t/SeqFeature/LocationFactory.t ............... ok
t/SeqFeature/Primer.t ........................ ok
t/SeqFeature/Range.t ......................... ok
t/SeqFeature/RangeI.t ........................ ok
t/SeqFeature/SeqAnalysisParser.t ............. ok
t/SeqFeature/SeqFeatAnnotated.t .............. ok
t/SeqFeature/SeqFeatCollection.t ............. ok
t/SeqFeature/SeqFeature.t .................... ok
t/SeqFeature/SeqFeaturePrimer.t .............. ok
t/SeqFeature/Unflattener.t ................... ok
t/SeqFeature/Unflattener2.t .................. ok
t/SeqIO.t .................................... ok
t/SeqIO/Handler.t ............................ ok
t/SeqIO/MultiFile.t .......................... ok
t/SeqIO/Multiple_fasta.t ..................... ok
t/SeqIO/SeqBuilder.t ......................... ok
t/SeqIO/Splicedseq.t ......................... ok
t/SeqIO/abi.t ................................ skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed
t/SeqIO/ace.t ................................ ok
t/SeqIO/agave.t .............................. ok
t/SeqIO/alf.t ................................ skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed
t/SeqIO/asciitree.t .......................... ok
t/SeqIO/bsml.t ............................... ok
t/SeqIO/bsml_sax.t ........................... ok
t/SeqIO/chadoxml.t ........................... ok
t/SeqIO/chaos.t .............................. ok
t/SeqIO/chaosxml.t ........................... ok
t/SeqIO/ctf.t ................................ skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed
t/SeqIO/embl.t ............................... ok
t/SeqIO/entrezgene.t ......................... ok
t/SeqIO/excel.t .............................. ok
t/SeqIO/exp.t ................................ skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed
t/SeqIO/fasta.t .............................. ok
t/SeqIO/fastq.t .............................. ok
t/SeqIO/flybase_chadoxml.t ................... ok
t/SeqIO/game.t ............................... ok
t/SeqIO/gcg.t ................................ ok
t/SeqIO/genbank.t ............................ ok
t/SeqIO/interpro.t ........................... ok
t/SeqIO/kegg.t ............................... ok
t/SeqIO/largefasta.t ......................... ok
t/SeqIO/lasergene.t .......................... ok
t/SeqIO/locuslink.t .......................... ok
t/SeqIO/metafasta.t .......................... ok
t/SeqIO/phd.t ................................ ok
t/SeqIO/pir.t ................................ ok
t/SeqIO/pln.t ................................ skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed
t/SeqIO/qual.t ............................... ok
t/SeqIO/raw.t ................................ ok
t/SeqIO/scf.t ................................ ok
t/SeqIO/strider.t ............................ ok
t/SeqIO/swiss.t .............................. ok
t/SeqIO/tab.t ................................ ok
t/SeqIO/table.t .............................. ok
t/SeqIO/tigr.t ............................... ok
t/SeqIO/tigrxml.t ............................ ok
t/SeqIO/tinyseq.t ............................ ok
t/SeqIO/ztr.t ................................ skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed
t/SeqTools/Backtranslate.t ................... ok
t/SeqTools/CodonTable.t ...................... ok
t/SeqTools/ECnumber.t ........................ ok
t/SeqTools/GuessSeqFormat.t .................. ok
t/SeqTools/OddCodes.t ........................ ok
t/SeqTools/SeqPattern.t ...................... ok
t/SeqTools/SeqStats.t ........................ ok
t/SeqTools/SeqUtils.t ........................ ok
t/SeqTools/SeqWords.t ........................ ok
t/Species.t .................................. ok
t/Structure/IO.t ............................. ok
t/Structure/Structure.t ...................... ok
t/Symbol.t ................................... ok
t/TaxonTree.t ................................ skipped: All tests are being skipped, probably because the module(s) being tested here are now deprecated
t/Tools/Alignment/Consed.t ................... ok
t/Tools/Analysis/DNA/ESEfinder.t ............. ok
t/Tools/Analysis/Protein/Domcut.t ............ ok
t/Tools/Analysis/Protein/ELM.t ............... ok
t/Tools/Analysis/Protein/GOR4.t .............. ok
t/Tools/Analysis/Protein/HNN.t ............... ok
t/Tools/Analysis/Protein/Mitoprot.t .......... ok
t/Tools/Analysis/Protein/NetPhos.t ........... ok
t/Tools/Analysis/Protein/Scansite.t .......... ok
t/Tools/Analysis/Protein/Sopma.t ............. ok
t/Tools/EMBOSS/Palindrome.t .................. ok
t/Tools/EUtilities/EUtilParameters.t ......... ok
t/Tools/EUtilities/egquery.t ................. ok
t/Tools/EUtilities/einfo.t ................... ok
t/Tools/EUtilities/elink_acheck.t ............ ok
t/Tools/EUtilities/elink_lcheck.t ............ ok
t/Tools/EUtilities/elink_llinks.t ............ ok
t/Tools/EUtilities/elink_ncheck.t ............ ok
t/Tools/EUtilities/elink_neighbor.t .......... ok
t/Tools/EUtilities/elink_neighbor_history.t .. ok
t/Tools/EUtilities/elink_scores.t ............ ok
t/Tools/EUtilities/epost.t ................... ok
t/Tools/EUtilities/esearch.t ................. ok
t/Tools/EUtilities/espell.t .................. ok
t/Tools/EUtilities/esummary.t ................ ok
t/Tools/Est2Genome.t ......................... ok
t/Tools/FootPrinter.t ........................ ok
t/Tools/GFF.t ................................ ok
t/Tools/Geneid.t ............................. ok
t/Tools/Genewise.t ........................... ok
t/Tools/Genomewise.t ......................... ok
t/Tools/Genpred.t ............................ ok
t/Tools/Hmmer.t .............................. ok
t/Tools/IUPAC.t .............................. ok
t/Tools/Lucy.t ............................... ok
t/Tools/Match.t .............................. ok
t/Tools/Phylo/Gerp.t ......................... ok
t/Tools/Phylo/Molphy.t ....................... ok
t/Tools/Phylo/PAML.t ......................... ok
t/Tools/Phylo/Phylip/ProtDist.t .............. ok
t/Tools/Primer3.t ............................ ok
t/Tools/Promoterwise.t ....................... ok
t/Tools/Pseudowise.t ......................... ok
t/Tools/QRNA.t ............................... ok
t/Tools/RandDistFunctions.t .................. ok
t/Tools/RepeatMasker.t ....................... ok
t/Tools/Run/RemoteBlast.t .................... ok
t/Tools/Run/RemoteBlast_rpsblast.t ........... ok
t/Tools/Run/StandAloneBlast.t ................ ok
t/Tools/Run/WrapperBase.t .................... ok
t/Tools/Seg.t ................................ ok
t/Tools/SiRNA.t .............................. ok
t/Tools/Sigcleave.t .......................... ok
t/Tools/Signalp.t ............................ ok
t/Tools/Signalp/ExtendedSignalp.t ............ ok
t/Tools/Sim4.t ............................... ok
t/Tools/Spidey/Spidey.t ...................... ok
t/Tools/TandemRepeatsFinder.t ................ ok
t/Tools/TargetP.t ............................ ok
t/Tools/Tmhmm.t .............................. ok
t/Tools/ePCR.t ............................... ok
t/Tools/pICalculator.t ....................... ok
t/Tools/rnamotif.t ........................... skipped: All tests are being skipped, probably because the module(s) being tested here are now deprecated
t/Tools/tRNAscanSE.t ......................... ok
t/Tree/Compatible.t .......................... ok
t/Tree/Node.t ................................ ok
t/Tree/PhyloNetwork/Factory.t ................ ok
t/Tree/PhyloNetwork/GraphViz.t ............... ok
t/Tree/PhyloNetwork/MuVector.t ............... ok
t/Tree/PhyloNetwork/PhyloNetwork.t ........... ok
t/Tree/PhyloNetwork/RandomFactory.t .......... ok
t/Tree/PhyloNetwork/TreeFactory.t ............ ok
t/Tree/RandomTreeFactory.t ................... ok
t/Tree/Tree.t ................................ ok
t/Tree/TreeIO.t .............................. ok
t/Tree/TreeIO/lintree.t ...................... ok
t/Tree/TreeIO/newick.t ....................... ok
t/Tree/TreeIO/nexus.t ........................ ok
t/Tree/TreeIO/nhx.t .......................... ok
t/Tree/TreeIO/phyloxml.t ..................... ok
Use of uninitialized value $txt[0] in join or string at /usr/share/perl5/SVG/Element.pm line 1202, line 1.
t/Tree/TreeIO/svggraph.t ..................... ok
t/Tree/TreeIO/tabtree.t ...................... ok
t/Tree/TreeStatistics.t ...................... ok
t/Variation/AAChange.t ....................... ok
t/Variation/AAReverseMutate.t ................ ok
t/Variation/Allele.t ......................... ok
t/Variation/DNAMutation.t .................... ok
t/Variation/RNAChange.t ...................... ok
t/Variation/SNP.t ............................ ok
t/Variation/SeqDiff.t ........................ ok
t/Variation/Variation_IO.t ................... ok

Test Summary Report

                                    • -

t/RemoteDB/Query/GenBank.t (Wstat: 256 Tests: 18 Failed: 1)
Failed test: 9
Non-zero exit status: 1
Parse errors: Bad plan. You planned 21 tests but ran 18.
t/RemoteDB/Taxonomy.t (Wstat: 256 Tests: 103 Failed: 1)
Failed test: 15
Non-zero exit status: 1
t/Root/RootIO.t (Wstat: 2304 Tests: 30 Failed: 0)
Non-zero exit status: 9
Parse errors: Bad plan. You planned 31 tests but ran 30.
Files=331, Tests=20974, 667 wallclock secs ( 2.80 usr 0.69 sys + 101.70 cusr 7.26 csys = 112.45 CPU)
Result: FAIL
Failed 3/331 test programs. 2/20974 subtests failed.